Advancements in Uncertainty-Aware Diagnostics with ConfiDx LLM

By João L. Carapinha

February 10, 2026

ConfiDx Ushers in Uncertainty-Aware Diagnostics

Uncertainty-aware diagnostics are transforming clinical decision-making through ConfiDx, a large language model (LLM) trained to recognize diagnostic uncertainty in cases with limited clinical data, addressing a key limitation of standard LLMs that often provide overconfident diagnoses. Key findings from the Nature Digital Medicine study demonstrate that ConfiDx outperforms models like GPT-4o, OpenAI-o1, Gemini-2.0, Claude-3.7, and DeepSeek-R1 in uncertainty recognition, diagnostic explanations, and uncertainty explanations, while assisting physicians to achieve 10.7% higher accuracy in uncertainty recognition, 14.6% better diagnostic explanation accuracy, and 26.3% improved uncertainty explanations compared to standalone experts. These improvements stem from training on evidence-complete and evidence-incomplete notes, enhancing clinical utility by promoting explainable AI that aligns with real-world medical decision-making.

ConfiDx Dominates Uncertainty Detection

ConfiDx delivers substantial advancements by not only listing possible diagnoses but also explaining how patient symptoms match clinical guidelines and identifying missing data needed for certainty, a capability absent in off-the-shelf LLMs that frequently overestimate diagnostic probabilities or hallucinate reasoning. For instance, when evaluated on a test dataset separate from training, ConfiDx showed marked improvements in uncertainty-aware diagnostics, enabling physicians to better follow its reasoning and trust its outputs due to reduced false confidence. This is evidenced by human evaluations where ConfiDx-assisted experts outperformed unassisted ones, with specific gains of 10.7% in recognizing uncertainty, 14.6% in diagnostic explanation accuracy, and 26.3% in uncertainty explanation, underscoring its potential to mitigate misdiagnosis risks in data-limited scenarios.

MIMIC-IV Powers Evidence-Gap Training

The study provides context on the clinical challenges of rapid diagnoses with insufficient data, where physicians must balance broad differentials, clinical guidelines, and probabilistic assessments, yet standard LLMs fail due to training on curated datasets that exclude noisy or incomplete cases. Zhou et al. developed ConfiDx using the MIMIC-IV dataset, comprising de-identified electronic health records from nearly 300,000 patients treated for cardiovascular, endocrine, or hepatic issues at Beth Israel Deaconess Medical Center; evidence-incomplete notes were generated by masking portions of relevant diagnostic evidence, training the model to explicitly acknowledge uncertainty. This methodological innovation—combining evidence-complete and incomplete cases—enables ConfiDx to assess data sufficiency against guideline criteria, fostering explainability and trustworthiness absent in models trained solely for definitive answers.

HEOR Boost from Smarter AI Tools

The findings of ConfiDx carry significant implications, particularly in evaluating the value of AI tools that reduce misdiagnosis rates and enhance diagnostic efficiency, potentially lowering downstream costs from adverse events in hospital settings where uncertainty contributes to patient harm. By improving physician accuracy in uncertainty recognition and explanation—up to 26.3% in key metrics—ConfiDx could support more informed treatment initiation, aligning with payer priorities for evidence-based decision-making in market access and reimbursement for digital health innovations. In the broader context of rising AI adoption in healthcare, this uncertainty-aware diagnostics approach may strengthen Health Technology Assessment (HTA) submissions by demonstrating real-world utility, such as through reduced lengths of stay or fewer diagnostic tests, ultimately facilitating cost-effective integration of LLMs into clinical workflows and improving patient outcomes while addressing reimbursement challenges for explainable AI systems.

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